Scientist I, Analysis of Proteomics and Connectomics Datasets – Allen Institute for Brain Science

The mission of the Allen Institute is to understand the principles that govern life and to advance health. Our creative and multi-dimensional teams focus on answering some of the biggest questions in bioscience. We accelerate foundational research, catalyze bold ideas, develop tools and models, and openly share our science to make a broad, transformational impact on the world.

The mission of the Allen Institute for Brain Science is to accelerate the understanding of how the human brain works in health and disease. Using a big science approach, we generate useful public resources, drive technological and analytical advances, and discover fundamental brain properties through the integration of experiments, modeling, and theory.

We seek an exceptional individual who will work with the Connectomics and Proteomics teams at the Allen Institute to analyze and create computational tools to interact with Light Microscopy based Connectomics (LICONN) datasets. For comparable work on Electron Microscopy by our team see https://www.nature.com/immersive/d42859-025-00001-w/index.html

At the Allen Institute, we believe that science is for everyone – and should be open to everyone. We are dedicated to combating biases and reducing barriers to STEM careers more broadly.

We also believe that science is better when it includes different perspectives and voices. We strive to make the Allen Institute a place where everyone feels like they belong and are empowered to do their best work in a supportive environment.

We are an equal-opportunity employer and strongly encourage people from all backgrounds to apply for our open positions.

Essential Functions

• Lead the development and implementation of computational tools to analyze LICONN datasets
• Lead and collaborate with other teams to extract discoveries from LICONN datasets and generate scientific impact
• Work collaboratively with other Institute teams to build pipelines and scale up Connectomics and Proteomics data analysis
• Present a periodic summary of progress to internal and external research community
• Publish and present findings in peer-reviewed journals and scientific meetings

Note: Reasonable accommodations may be made to enable individuals with disabilities to perform the essential functions. This description reflects management’s assignment of essential functions; it does not proscribe or restrict the tasks that may be assigned.

Required Education and Experience

• Ph.D. in Neuroscience, Computer Science, or related or an equivalent combination of degree and experience
• Proven strong background in computational methods and data analysis
• Strong publication record
• Demonstrated broad knowledge in neuroscience

Preferred Education and Experience

• Exceptional oral and written communication and organizational skills
• Experience in relevant computational data analysis methods in Connectomics such as CAVE
• Experience with Python
• Ability to work independently and within a collaborative, multi-disciplinary environment to meet aggressive timelines
• Ability to guide teams and coordinate activities within and across institutions, including coaching/mentoring junior members

Work Environment

• Laboratory environment – occasionally entering labs where experiments take place
• Working at a desk with computer analyzing data

Physical Demands

• Fine motor movements in fingers/hands to operate computers and other office equipment; repetitive motion with lab equipment

Position Type/Expected Hours of Work

• This role is currently working onsite. We are a Washington State employer, and the primary work location for this role is 615 Westlake Ave N.; any remote work must be performed in Washington State.

Travel

• Occasional travel to collaborator sites
• Occasional attendance and participation in national and international conferences may be required

Additional Comments

• Please include a cover letter with your application
• **Please note, this opportunity offers relocation assistance**
• **Please note, this opportunity may offer visa sponsorship**

Annualized Salary Range

$92,250 - $114,100*

* Final salary depends on the required education for the role, experience, level of skills relevant to the role, and work location, where applicable.

Benefits

Employees (and their families) are eligible to enroll in benefits per eligibility rules outlined in the Allen Institute’s Benefits Guide. These benefits include medical, dental, vision, and basic life insurance. Employees are also eligible to enroll in the Allen Institute’s 401k plan. Paid time off is also available as outlined in the Allen Institutes Benefits Guide. Details on the Allen Institute’s benefits offering are located at the following link to the Benefits Guide: https://alleninstitute.org/careers/benefits.

It is the policy of the Allen Institute to provide equal employment opportunity (EEO) to all persons regardless of age, color, national origin, citizenship status, physical or mental disability, race, religion, creed, gender, sex, sexual orientation, gender identity and/or expression, genetic information, marital status, status with regard to public assistance, veteran status, or any other characteristic protected by federal, state or local law. In addition, the Allen Institute will provide reasonable accommodations for qualified individuals with disabilities.